Microscopy Nuclei
Steps:
Conda Environment
Apptainer container
Preprocessing
U-Net training
HoVer-Net training
Evaluation
Full pipeline
Microscopy Nuclei
Microscopic Nuclei documentation!
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Microscopic Nuclei documentation!
Steps:
Conda Environment
Apptainer container
Preprocessing
Access to Swestore
Lftp
WinSCP
Format conversion
Normalization script
Check validity of plates
U-Net training
Annotation
cvat
Published Datasets
Preprcoessing
Training
Prediction
HoVer-Net training
Evaluation
U-Net evaluation
HoVer-Net evaluation
Full pipeline
Download and Extract
Image list
Run Prediction script
Area and Number of Nuclei
Visualization